miRBase entry: osa-MIR162b

Stem-loop osa-MIR162b


Accession
MI0001102
Description
Oryza sativa osa-MIR162b precursor miRNA
Gene family
MIPF0000169; MIR162_2

Literature search
26 open access papers mention osa-MIR162b
(42 sentences)

Sequence

63 reads, 47 reads per million, 2 experiments
ugggugaugccugggcgcagugguuuaucgaucucuucccugccuugugcugcuccgaucgaugcccgugcugauucuugauaauauacaacgcaggaaucgaUCGAUAAGCCUCUGCAUCCAGaucucacuuu
.((((((...(((((.((((.((((((((((((..((((.(((.(((((....((.(((((..((....)))))))...)).....))))).)))))))..)))))))))))).)))).)))))...)))))).

Structure
u      ugc     c    u            uc    c   c     -cugc  --c     au  c 
 ggguga   cuggg gcag gguuuaucgauc  uucc ugc uugug     uc   gaucg  gc c
 ||||||   ||||| |||| ||||||||||||  |||| ||| |||||     ||   |||||  ||  
 uucacu   GACCU CGUC CCGAAUAGCUag  aagg acg aacau     ag   uuagu  cg g
u      cua     A    U            cu    -   c     auaau  uuc     --  u 


Annotation confidence Not enough data
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Comments
This sequence is a predicted paralogue of the previously identified miR162 family [1]. It is predicted to target mRNAs coding for DICER-LIKE 1 (DL1) proteins.

Genome context
Chr4: 24405899-24406032 [+]

Database links

Mature osa-miR162b

Accession MIMAT0001032
Description Oryza sativa osa-miR162b mature miRNA
Sequence 104 - UCGAUAAGCCUCUGCAUCCAG - 124
Evidence not_experimental
Database links

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799