Stem-loop osa-MIR164c

Accession

MI0001103

Description

Oryza sativa osa-MIR164c precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

67 open access papers mention osa-MIR164c
(285 sentences)

Sequence

11 reads, 8 reads per million, 2 experiments

agguucuuguUGGAGAAGCAGGGUACGUGCAaaaugcacaccgguuggucgagcuaauuaacaagcucugacgaccauggugaucgaaugcacgugcuccccuucuccaccauggccuu
(((((..((.((((((((..(((((((((((...((..(((((((((.(((((((........))))).)))))))..))))..))..)))))))))))..)))))))).)).))))).

Structure

-     cu  u        CA           aaa  ca    --     g  -     aau 
 agguu  ug UGGAGAAG  GGGUACGUGCA   ug  cacc  gguug uc gagcu   u
 |||||  || ||||||||  |||||||||||   ||  ||||  ||||| || |||||    
 uccgg  ac accucuuc  cucgugcacgu   gc  gugg  ccagc ag cucga   a
u     -u  c        cc           -aa  ua    ua     -  u     aca 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR164 family [1]. It is predicted to target mRNAs coding for NAC domain transcription factors.

Genome context

Chr5: 17327440-17327558 [+]

Mature osa-miR164c

• Accession: MIMAT0001033
• Description: Oryza sativa osa-miR164c mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGUACGUGCA - 31
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799