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miRBase |
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Stem-loop sequence osa-MIR167d |
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Accession | MI0001109 (change log) | ||||
Description | Oryza sativa miR167d stem-loop | ||||
Gene family | MIPF0000023; MIR167_1 | ||||
Literature search |
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83 open access papers mention osa-MIR167d | ||||
Stem-loop |
u g c - gagugcuuauuaggugaggg 5' cau ag ag ugaagcugc cagcaugaucugau c ||| || || ||||||||| |||||||||||||| a 3' gug uc uc acuuugacg gucguacuagacua g u g u u gaaacaaaaccgucaguuaa |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
This sequence is a predicted paralogue of the previously identified miR167 family [1]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors). |
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Genome context |
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Database links |
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Mature sequence osa-miR167d-5p |
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Accession | MIMAT0001039 |
Previous IDs | osa-miR167d |
Sequence |
11 - ugaagcugccagcaugaucug - 31 |
Deep sequencing | 86991 reads, 2 experiments |
Evidence | by similarity; MI0000209 |
Database links |
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Mature sequence osa-miR167d-3p |
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Accession | MIMAT0022872 |
Sequence |
81 - gaucaugcugugcaguuucauc - 102 |
Deep sequencing | 9 reads, 2 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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References |
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1 |
PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
Mol Cell. 14:787-799(2004).
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2 |
PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"
PLoS Pathog. 7:e1002176(2011).
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