Stem-loop osa-MIR168b

Accession

MI0001116

Description

Oryza sativa osa-MIR168b precursor miRNA

Literature search

59 open access papers mention osa-MIR168b
(206 sentences)

Sequence

2 reads, 1 reads per million, 2 experiments

uggucuugugAGGCUUGGUGCAGCUCGGGAAcuguucuugauggacuggcaggaacuccauguccaccacugccacuccuguguuguggcauuccuccuugccguu
.((.(..(.((((..((.((((((.(((((...((...((.((((((((.((...))))).))))).))..))...))))).)))))).))..)))))..)))...

Structure

--u  u uu u    CU  G      U     Acu  ucu  a     -   c  g 
   gg c  g gAGG  UG UGCAGC CGGGA   gu   ug uggac ugg ag  
   || |  | ||||  || |||||| |||||   ||   || ||||| ||| || a
   cc g  c cucc  ac guguug guccu   cg   ac accug acc uc  
uug  - uu -    uu  g      u     cac  -uc  c     u   -  a 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR168 family [1]. It is predicted to target mRNAs coding for the ARGONAUTE protein.

Genome context

Chr2: 27336428-27336533 [+]

Mature osa-miR168b

• Accession: MIMAT0001046
• Description: Oryza sativa osa-miR168b mature miRNA
• Sequence: 11 - AGGCUUGGUGCAGCUCGGGAA - 31
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799