Stem-loop osa-MIR169b

Accession

MI0001117

Description

Oryza sativa osa-MIR169b precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

60 open access papers mention osa-MIR169b
(329 sentences)

Sequence

4667 reads, 3267 reads per million, 2 experiments

gaacggaaugCAGCCAAGGAUGACUUGCCGGuacguguaugcauguuucaagguacuauaugugcccccaacuguuuuagauccaugcugacauuuuccggcaaguuguccuuggcuacgucuuguuc
((((((.(((.((((((((((((((((((((...((((..(((((..((..(((((.....))))).............))..)))))..))))...)))))))))))))))))))).))).))))))

Structure

      a   C                    uac    au     uu  -----------aa     u 
gaacgg aug AGCCAAGGAUGACUUGCCGG   gugu  gcaug  uc             gguac a
|||||| ||| ||||||||||||||||||||   ||||  |||||  ||             ||||| u
cuuguu ugc ucgguuccuguugaacggcc   uaca  cguac  ag             ccgug a
      c   a                    uuu    gu     cu  auuuugucaaccc     u 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

Chr6: 27295908-27296035 [-]

Mature osa-miR169b

• Accession: MIMAT0001047
• Description: Oryza sativa osa-miR169b mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGG - 31
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799