Stem-loop osa-MIR169d

Accession

MI0001119

Description

Oryza sativa osa-MIR169d precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

60 open access papers mention osa-MIR169d
(313 sentences)

Sequence

1 reads, 1 reads per million, 1 experiments

auuuaucgugUAGCCAAGGAUGAAUUGCCGGcguuucacgcuguugauggugcgugcauauauaaguuggcgccggcaagucauuucaggcuacauguuugcc
......(((((((((..((((((.(((((((((((.(((((..........)))))............))))))))))).))))))..)))))))))......

Structure

auuuau         AA      A           -----------u     uguu 
      cgugUAGCC  GGAUGA UUGCCGGcguu            cacgc    g
      |||||||||  |||||| |||||||||||            |||||     
      guacaucgg  uuuacu aacggccgcgg            gugcg    a
ccguuu         ac      g           uugaauauauac     uggu 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

Chr9: 14620382-14620484 [-]

Mature osa-miR169d

• Accession: MIMAT0001049
• Description: Oryza sativa osa-miR169d mature miRNA
• Sequence: 11 - UAGCCAAGGAUGAAUUGCCGG - 31
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799