miRBase entry: osa-MIR169e

Stem-loop osa-MIR169e


Accession
MI0001120
Description
Oryza sativa osa-MIR169e precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
63 open access papers mention osa-MIR169e
(315 sentences)

Sequence

1148 reads, 804 reads per million, 2 experiments
gcugguugugUAGCCAAGGAUGACUUGCCGGccugguuuguguucaucagcaauccagcauaugcuguauugccgugugugaucgaucgaugcauggaccggcaaguuauuuucuuuggcuacauuacaacc
...((((((((((((((((((((((((((((((..(((((((.(((((((((((.((((....)))).)))))..)).)))).))..))).))..)).)))))))))))...)))))))))))...))))))

Structure
gcu      ---           ---           -  ug  -   --  u    -  --     c    a 
   gguugu   gUAGCCAAGGA   UGACUUGCCGG cc  gu uug  ug ucau ca  gcaau cagc u
   ||||||   |||||||||||   ||||||||||| ||  || |||  || |||| ||  ||||| ||||  
   ccaaca   caucgguuucu   auugaacggcc gg  cg agc  gc agug gu  cguua gucg a
---      uua           uuu           a  ua  u   ua  u    u  gc     u    u 


Annotation confidence Not enough data
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Comments
This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context
Chr2: 31205866-31205997 [-]

Database links

Mature osa-miR169e

Accession MIMAT0001050
Description Oryza sativa osa-miR169e mature miRNA
Sequence 11 - UAGCCAAGGAUGACUUGCCGG - 31
Evidence not_experimental
Database links

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799