Stem-loop osa-MIR169h

Accession

MI0001123

Description

Oryza sativa osa-MIR169h precursor miRNA

Literature search

62 open access papers mention osa-MIR169h
(316 sentences)

Sequence

302055 reads, 2254.0 reads per million, 142 experiments

uuagcucuggUAGCCAAGGAUGACUUGCCUGuguccuuguguguaaggaucauuaauuauuauucagaaaaugauccuuucagcagguuucaUGGGCAGUCUCCUUGGCUAGCcugagugau
...((((.((((((((((((.((((.(((((((..(((((.((.((((((((((...............)))))))))).)))))))...)))))))))))))))))))).))).))))...

Structure

uua    u   -         U    U       -uc     g  u          aauuau 
   gcuc ggU AGCCAAGGA GACU GCCUGug   cuugu ug aaggaucauu      u
   |||| ||| ||||||||| |||| |||||||   ||||| || ||||||||||      a
   ugag cCG UCGGUUCCU CUGA CGGGUac   ggacg ac uuccuaguaa      u
uag    u   A         -    -       uuu     -  u          aagacu 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

8: 26807349-26807470 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR169h

Mature osa-miR169h-5p

• Accession: MIMAT0001053
• Description: Oryza sativa osa-miR169h-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCUG - 31
• Evidence: not_experimental

Mature osa-miR169h-3p

• Accession: MIMAT0055960
• Description: Oryza sativa osa-miR169h-3p mature miRNA
• Sequence: 93 - UGGGCAGUCUCCUUGGCUAGC - 113
• Evidence: experimental ; unknown

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799