Stem-loop osa-MIR169h

Accession

MI0001123

Description

Oryza sativa osa-MIR169h precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

62 open access papers mention osa-MIR169h
(315 sentences)

Sequence

1427 reads, 1003 reads per million, 2 experiments

uuagcucuggUAGCCAAGGAUGACUUGCCUGuguccuuguguguaaggaucauuaauuauuauucagaaaaugauccuuucagcagguuucaugggcagucuccuuggcuagccugagugau
...((((.((((((((((((.((((.(((((((..(((((.((.((((((((((...............)))))))))).)))))))...)))))))))))))))))))).))).))))...

Structure

uua    u   -         U    U       -uc     g  u          aauuau 
   gcuc ggU AGCCAAGGA GACU GCCUGug   cuugu ug aaggaucauu      u
   |||| ||| ||||||||| |||| |||||||   ||||| || ||||||||||      a
   ugag ccg ucgguuccu cuga cggguac   ggacg ac uuccuaguaa      u
uag    u   a         -    -       uuu     -  u          aagacu 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

Chr8: 26807349-26807470 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR169h

Mature osa-miR169h

• Accession: MIMAT0001053
• Description: Oryza sativa osa-miR169h mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCUG - 31
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799