Stem-loop osa-MIR169j

Accession

MI0001125

Description

Oryza sativa osa-MIR169j precursor miRNA

Literature search

63 open access papers mention osa-MIR169j
(311 sentences)

Sequence

299867 reads, 2238.0 reads per million, 142 experiments

ucgcaucuggUAGCCAAGGAUGACUUGCCUGUGucucugcucaugugcaguagaagaagaugcauuucuagcugcuuucugcauaugugaucucacaGGCAGUCUCCUUGGCUAGCCUGagcggc
.(((.((.((((((((((((.((((.(((((((......(.(((((((((.((.((.(((......)))..)).))..))))))))).)....)))))))))))))))))))).))).)))))..

Structure

-u   a  u   -         U    U       ucucug u         -u  a  -a   ug 
  cgc uc ggU AGCCAAGGA GACU GCCUGUG      c caugugcag  ag ag  aga  c
  ||| || ||| ||||||||| |||| |||||||      | |||||||||  || ||  |||   
  gcg aG CCG UCGGUUCCU CUGA CGGacac      g guauacguc  uc uc  ucu  a
cg   -  U   A         -    -       --ucua u         uu  g  ga   uu 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

9: 19788861-19788985 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR169j

Mature osa-miR169j-5p

• Accession: MIMAT0001055
• Description: Oryza sativa osa-miR169j-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCUGUG - 33
• Evidence: not_experimental

Mature osa-miR169j-3p

• Accession: MIMAT0055961
• Description: Oryza sativa osa-miR169j-3p mature miRNA
• Sequence: 98 - GGCAGUCUCCUUGGCUAGCCUG - 119
• Evidence: experimental ; unknown

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799