Stem-loop osa-MIR169j

Accession

MI0001125

Description

Oryza sativa osa-MIR169j precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

62 open access papers mention osa-MIR169j
(313 sentences)

Sequence

1438 reads, 1011 reads per million, 2 experiments

ucgcaucuggUAGCCAAGGAUGACUUGCCUGugucucugcucaugugcaguagaagaagaugcauuucuagcugcuuucugcauaugugaucucacaggcagucuccuuggcuagccugagcggc
.(((.((.((((((((((((.((((.(((((((......(.(((((((((.((.((.(((......)))..)).))..))))))))).)....)))))))))))))))))))).))).)))))..

Structure

-u   a  u   -         U    U       ucucug u         -u  a  -a   ug 
  cgc uc ggU AGCCAAGGA GACU GCCUGug      c caugugcag  ag ag  aga  c
  ||| || ||| ||||||||| |||| |||||||      | |||||||||  || ||  |||   
  gcg ag ccg ucgguuccu cuga cggacac      g guauacguc  uc uc  ucu  a
cg   -  u   a         -    -       --ucua u         uu  g  ga   uu 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

Chr9: 19788861-19788985 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR169j

Mature osa-miR169j

• Accession: MIMAT0001055
• Description: Oryza sativa osa-miR169j mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCUG - 31
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799