miRBase entry: osa-MIR169k

Stem-loop osa-MIR169k


Accession
MI0001126
Description
Oryza sativa osa-MIR169k precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
61 open access papers mention osa-MIR169k
(307 sentences)

Sequence

1442 reads, 1016 reads per million, 2 experiments
ucugucuagaUAGCCAAGGAUGACUUGCCUGuggccucuuggagagagagguguagcuuaauuagcagcaugguuugagcauugcuugaucgguugaucgcuucgcuugcucugcaugagaucuuacaggcagucuccuuggcuagucugggcggc
.(((((((((((((((((((.((((.((((((((.(((.((.((((..(((((.(((...((((((((((..((....))..))))......)))))).))).))))).)))).)).)))...))))))))))))))))))))).)))))))))).

Structure
u          -         U    U        --c   u  g    ag     u   uua      ------    ug  u 
 cugucuagaU AGCCAAGGA GACU GCCUGugg   cuc ug agag  aggug agc   auuagc      agca  gu u
 |||||||||| ||||||||| |||| ||||||||   ||| || ||||  ||||| |||   ||||||      ||||  ||  
 ggcgggucug ucgguuccu cuga cggacauu   gag ac ucuc  uucgc ucg   uaguug      ucgu  cg g
c          a         -    -        cua   u  g    -g     u   --c      gcuagu    ua  a 


Annotation confidence Not enough data
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Comments
This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context
Chr9: 19792133-19792288 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR169k
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR169k

Accession MIMAT0001056
Description Oryza sativa osa-miR169k mature miRNA
Sequence 11 - UAGCCAAGGAUGACUUGCCUG - 31
Evidence not_experimental
Database links

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799