Stem-loop osa-MIR169l

Accession

MI0001127

Description

Oryza sativa osa-MIR169l precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

62 open access papers mention osa-MIR169l
(308 sentences)

Sequence

1427 reads, 1003 reads per million, 2 experiments

uuaucucugaUAGCCAAGGAUGACUUGCCUGuguccucccugaaggauuagcaauuuaaugauccuuuaagcugguucaugggcagucuccuuggcuagccugagugg
....(((...((((((((((.((((.(((((((.((..(.((((((((((.........)))))))))).)..))..)))))))))))))))))))))....)))...

Structure

uuau   -uga          U    U       -u  uc c          gca 
    cuc    UAGCCAAGGA GACU GCCUGug  cc  c ugaaggauua   a
    |||    |||||||||| |||| |||||||  ||  | ||||||||||   u
    gag    aucgguuccu cuga cggguac  gg  g auuuccuagu   u
-ggu   uccg          -    -       uu  uc a          aau 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

Chr8: 26817488-26817595 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR169l

Mature osa-miR169l

• Accession: MIMAT0001057
• Description: Oryza sativa osa-miR169l mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCUG - 31
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799