Stem-loop osa-MIR169m

Accession

MI0001128

Description

Oryza sativa osa-MIR169m precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

61 open access papers mention osa-MIR169m
(312 sentences)

Sequence

1439 reads, 1012 reads per million, 2 experiments

ugaguccuggUAGCCAAGGAUGACUUGCCUGuauauuuauauauauaugugugugugaucaauggauggauugaucaagcugcuugcaggcucaugcauauauauguacaggcagucuccuuggcuagcccggcuacc
..((.((.((((((((((((.((((.((((((((......(((((((((((((..((((((((......))))))))((((.......)))))))))))))))))))))))))))))))))))))).))).))))...

Structure

-ug  u  u   -         U    U        auuuau             -------------ug        gg 
   ag cc ggU AGCCAAGGA GACU GCCUGuau      auauauaugugug               ugaucaau  a
   || || ||| ||||||||| |||| ||||||||      |||||||||||||               ||||||||   
   uc gg ccg ucgguuccu cuga cggacaug      uauauauacguac               acuaguua  u
cca  -  c   a         -    -        ------             ucggacguucgucga        gg 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

Chr8: 26813897-26814034 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from osa-MIR169m

Mature osa-miR169m

• Accession: MIMAT0001058
• Description: Oryza sativa osa-miR169m mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCUG - 31
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799