Stem-loop osa-MIR169o

Accession

MI0001130

Description

Oryza sativa osa-MIR169o precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

60 open access papers mention osa-MIR169o
(326 sentences)

Sequence

112 reads, 82 reads per million, 2 experiments

cucccuuuggUAGCCAAGAAUGACUUGCCUAcgcuuuugcccucuguuggcucauccauccgucuaucuaucugccauggcagauggcagauuaaggguuucugaaagaaauucuugugauaggaugugcaaugaggcugcaugggccggucuucuuggcuagccagaguggc
..((((((((((((((((((.((((.(((((.((......((((.((((.(.((((((((.........(((((((((.....)))))))))(((((((((((...))))))))))).))).))))).)))))))))..)).))))).))))))))))))).))))))).)).

Structure

cu  -       -         U    U     c  uuuugc    u    g u     -   cgucuaucuaucugccauggcagauggcagau           g 
  cc cuuuggU AGCCAAGAA GACU GCCUA gc      ccuc guug c caucc auc                                uaaggguuucu  
  || ||||||| ||||||||| |||| ||||| ||      |||| |||| | ||||| |||                                ||||||||||| a
  gg gagaccg ucgguucuu cugg cgggu cg      ggag uaac g guagg uag                                guucuuaaaga  
-c  u       a         -    c     a  ----uc    -    - u     a   -------------------------------u           a 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

Chr11: 6081528-6081700 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR169o

Mature osa-miR169o

• Accession: MIMAT0001060
• Description: Oryza sativa osa-miR169o mature miRNA
• Sequence: 11 - UAGCCAAGAAUGACUUGCCUA - 31
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799