Stem-loop osa-MIR169p

Accession

MI0001131

Description

Oryza sativa osa-MIR169p precursor miRNA

Literature search

59 open access papers mention osa-MIR169p
(307 sentences)

Sequence

18560 reads, 192.0 reads per million, 105 experiments

gagcaAGGUGUAGCCAAGGACAAacuugccggaucaacagagaaggacugccagucuccggccaauuaauuaaccucgccgucggccaucgccggCCGGCAAGUCAUCCUUGGCUGcauccugcuc
(((((.((((((((((((((...(((((((((.......((((.((....))..))))((((...............))))(((((....))))))))))))))..)))))))))))))).)))))

Structure

     A              CAA         ------------------------------aucaaca    -a  a 
gagca GGUGUAGCCAAGGA   acuugccgg                                     gaga  gg c
||||| ||||||||||||||   |||||||||                                     ||||  ||  
cucgu cuacGUCGGUUCCU   UGAACGGCC                                     cucu  cc u
     c              -AC         ggccgcuaccggcugccgcuccaauuaauuaaccggc    ga  g 

Annotation confidence Low

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

8: 7641327-7641452 [-]

Mature osa-miR169p-5p

• Accession: MIMAT0055967
• Description: Oryza sativa osa-miR169p-5p mature miRNA
• Sequence: 6 - AGGUGUAGCCAAGGACAA - 23
• Evidence: experimental ; unknown

Mature osa-miR169p-3p

• Accession: MIMAT0001061
• Description: Oryza sativa osa-miR169p-3p mature miRNA
• Sequence: 96 - CCGGCAAGUCAUCCUUGGCUG - 116
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799