Stem-loop osa-MIR171b

Accession

MI0001133

Description

Oryza sativa osa-MIR171b precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

45 open access papers mention osa-MIR171b
(160 sentences)

Sequence

516 reads, 363 reads per million, 2 experiments

gcgacgacgggauauuggggcgguucaaucagaaagcuugugcuccggaagcgaggagcucuacucuuuUGAUUGAGCCGUGCCAAUAUCacgucgcauc
((((((....((((((((.(((((((((((((((.....(.(((((........))))).).....))))))))))))))).)))))))).))))))...

Structure

---      acgg        g               agcuu u     gga 
   gcgacg    gauauugg gcgguucaaucagaa     g gcucc   a
   ||||||    |||||||| |||||||||||||||     | |||||    
   cgcugc    CUAUAACC UGCCGAGUUAGUuuu     c cgagg   g
cua      ---a        G               cucau u     agc 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR171 family [1]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors.

Genome context

Chr8: 5369153-5369252 [+]

Mature osa-miR171b

• Accession: MIMAT0001063
• Description: Oryza sativa osa-miR171b mature miRNA
• Sequence: 70 - UGAUUGAGCCGUGCCAAUAUC - 90
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799