miRBase entry: osa-MIR172a

Stem-loop osa-MIR172a


Accession
MI0001139
Description
Oryza sativa osa-MIR172a precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
78 open access papers mention osa-MIR172a
(507 sentences)

Sequence

5010 reads, 3477 reads per million, 2 experiments
guguuugcgggcguggcaucaucaagauucacauccaugcauauaucacaagacgcacauauacauccgauuuggcugAGAAUCUUGAUGAUGCUGCAUccgcagacaa
.((((((((((.((((((((((((((((((.((.((((((..............)))...............))).)).)))))))))))))))))).)))))))))).

Structure
g          c                  a  u   ---------------   auauau 
 uguuugcggg guggcaucaucaagauuc ca cca               ugc      c
 |||||||||| |||||||||||||||||| || |||               |||       
 acagacgccU CGUCGUAGUAGUUCUAAG gu ggu               acg      a
a          A                  A  c   uuagccuacauauac   cagaac 


Annotation confidence Not enough data
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Comments
This sequence is a predicted paralogue of the previously identified miR172 family [1]. It is predicted to target mRNAs coding for APETALA2-like transcription factors.

Genome context
Chr9: 22881834-22881942 [+]

Database links

Mature osa-miR172a

Accession MIMAT0001069
Description Oryza sativa osa-miR172a mature miRNA
Sequence 79 - AGAAUCUUGAUGAUGCUGCAU - 99
Evidence not_experimental
Database links

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799