Stem-loop osa-MIR172b

Accession

MI0001140

Description

Oryza sativa osa-MIR172b precursor miRNA

Literature search

80 open access papers mention osa-MIR172b
(514 sentences)

Sequence

7688 reads, 36.0 reads per million, 114 experiments

gugauuucugacGUGGCAUCAUCAAGAUUCACACauuacauugcaugcaugcauaugucuaugcaucuuugagcuuguuguucugaucucaacaaccuagcuagcuaauauuucucuccuggcccugaccugcaugaugcaugguugcacgcauggagagagaagagagagaucgaagcuaauuaaacgcauguguauauaugugugGGAAUCUUGAUGAUGCUGCAUCggaaauuaa
.((((((((((.((((((((((((((((((((((((.....((((((((((((((....))))))).....((((.((((((........))))))..))))((((....(((((((((..((...((((((((...)))).))))....))..))))))))).((......))..))))........))))))).....))))))..)))))))))))))))))).)))))))))).

Structure

g          c                  --      uacau       augcauaugucuaugcaucuuugagcuuguuguucugaucucaacaaccuagcu    ---------aaua         ug  -ccu    -    u 
 ugauuucuga GUGGCAUCAUCAAGAUUC  ACACau     ugcaugc                                                      agcu             uuucucucc  gc    gacc ugca  
 |||||||||| ||||||||||||||||||  ||||||     |||||||                                                      ||||             |||||||||  ||    |||| |||| g
 auuaaaggCU CGUCGUAGUAGUUCUAAG  ugugua     guguacg                                                      ucga             agagagagg  cg    uugg acgu  
a          A                  Gg      uauau       ----------------------------------------------caaauuaa    agcuagagagaga         ua  cacg    u    a 

Annotation confidence Medium

Comments

This sequence is a predicted paralogue of the previously identified miR172 family [1]. It is predicted to target mRNAs coding for APETALA2-like transcription factors.

Genome context

1: 42923736-42923973 [-]

Mature osa-miR172b-5p

• Accession: MIMAT0055972
• Description: Oryza sativa osa-miR172b-5p mature miRNA
• Sequence: 13 - GUGGCAUCAUCAAGAUUCACAC - 34
• Evidence: experimental ; unknown

Mature osa-miR172b-3p

• Accession: MIMAT0001070
• Description: Oryza sativa osa-miR172b-3p mature miRNA
• Sequence: 208 - GGAAUCUUGAUGAUGCUGCAUC - 229
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799