miRBase entry: osa-MIR172c

Stem-loop osa-MIR172c


Accession
MI0001141
Description
Oryza sativa osa-MIR172c precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
77 open access papers mention osa-MIR172c
(461 sentences)

Sequence

287 reads, 199 reads per million, 2 experiments
cuuguugcgggugcagcgucaucaagauucacgugugccgcacggcacacguaucgguuuucaaguguagucaucgugcgUGAAUCUUGAUGAUGCUGCACcagcaaagag
(((.((((.((((((((((((((((((((((((((((((....)))))))(((.((((..............)))))))))))))))))))))))))))))).)))).)))

Structure
   g    g                       -----------------------------       g 
cuu uugc ggugcagcgucaucaagauucac                             gugugcc c
||| |||| |||||||||||||||||||||||                             |||||||  
gag aacg cCACGUCGUAGUAGUUCUAAGUg                             cacacgg a
   a    a                       cgugcuacugaugugaacuuuuggcuaug       c 


Annotation confidence Not enough data
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Comments
This sequence is a predicted paralogue of the previously identified miR172 family [1]. It is predicted to target mRNAs coding for APETALA2-like transcription factors.

Genome context
Chr7: 13111485-13111595 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR172c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR172c

Accession MIMAT0001071
Description Oryza sativa osa-miR172c mature miRNA
Sequence 81 - UGAAUCUUGAUGAUGCUGCAC - 101
Evidence not_experimental
Database links

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799