Stem-loop sequence osa-MIR171h

Accession

MI0001147 (change log)

Description

Oryza sativa miR171h stem-loop

Gene family

MIPF0000104; MIR171_2

Literature search

44 open access papers mention osa-MIR171h
(150 sentences)

Stem-loop

   ----------a   -      g      uu        u             guu 
5'            gaa gaagag acaugg  ugguauug uucggcucauguc   c
              ||| |||||| ||||||  |||||||| |||||||||||||   a
3'            cuu cuucuu uguacu  acuauaac aagccgaguguag   c
   ucuucaagaga   a      a      -c        c             aca 

Deep sequencing

93 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr4: 28482456-28482556 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001147

Mature sequence osa-miR171h

• Accession: MIMAT0001077
• Sequence: 54 - gugagccgaaccaauaucacu - 74
• Deep sequencing: 16 reads, 2 experiments
• Evidence: by similarity; MI0000990
• Database links:
  • RNAcentral:URS000030490C_39947

References

1. PMID:15258262 "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis" Sunkar R, Zhu JK Plant Cell. 16:2001-2019(2004).