Stem-loop sequence osa-MIR167j

Accession

MI0001156 (change log)

Description

Oryza sativa miR167j stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

83 open access papers mention osa-MIR167j
(246 sentences)

Stem-loop

   ---- ug ga   -     - cu a     c         -             -    uu c  u   --uu        ugaa 
5'     u  u  ugu gugca c  u agcag ugaagcugc cagcaugaucuga ucuu  g ga cuc    uuuuuauc    u
       |  |  ||| ||||| |  | ||||| ||||||||| ||||||||||||| ||||  | || |||    ||||||||     
3'     a  g  aca cacgu g  a ucguc acuuugacg gucgugcuagacu agaa  c cu ggg    aaagguag    a
   uuua gu uc   u     a cu a     u         c             u    -u -  u   uuau        uuga 

Deep sequencing

87013 reads, 5.86e+04 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr1: 32686068-32686227 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001156

Mature sequence osa-miR167j

• Accession: MIMAT0001086
• Sequence: 26 - ugaagcugccagcaugaucug - 46
• Deep sequencing: 86998 reads, 2 experiments
• Evidence: by similarity; MI0000208
• Database links:
  • RNAcentral:URS00004B5529_39947

References

1. PMID:15685364 "Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa" Li Y, Li W, Jin YX Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).