miRBase entry: gga-mir-216a

Stem-loop gga-mir-216a


Accession
MI0001200
Description
Gallus gallus gga-mir-216a precursor miRNA
Gene family
MIPF0000054; mir-216

Literature search
3 open access papers mention gga-mir-216a
(5 sentences)

Sequence

446 reads, 18 reads per million, 5 experiments
gauggcugugaauuggcuUAAUCUCAGCUGGCAACUGUGagcaguuaauaauucucacagugguaucugggauuaugcuaaacacagcaauuucuuugcucuaaug
....((((((..(((((.(((((((((.((.((.(((((((.((((...))))))))))))).)).))))))))).))))).))))))..................

Structure
--------------gaug      aa     u         C  G  A       c    a 
                  gcugug  uuggc UAAUCUCAG UG CA CUGUGag aguu  
                  ||||||  ||||| ||||||||| || || ||||||| |||| a
                  cgacac  aaucg auuaggguc au gu gacacuc uuaa  
guaaucucguuucuuuaa      -a     u         u  g  -       -    u 


Annotation confidence Not enough data
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Comments
This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context
chr3: 318076-318181 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from gga-mir-216a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-216a

Accession MIMAT0001131
Description Gallus gallus gga-miR-216a mature miRNA
Sequence 19 - UAAUCUCAGCUGGCAACUGUG - 39
Evidence not_experimental

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716