miRBase entry: gga-mir-138-2

Stem-loop gga-mir-138-2


Accession
MI0001228
Description
Gallus gallus gga-mir-138-2 precursor miRNA
Gene family
MIPF0000075; mir-138

Literature search
5 open access papers mention gga-mir-138-2
(12 sentences)

Sequence

35334 reads, 541 reads per million, 5 experiments
guugcugcAGCUGGUGUUGUGAAUCaggccgacggcaagcgcuuccuacuauccggcUAUUUCACUACACCAGGGUUgcauca
(.(((.((..(((((((.(((((...(((((..(((....)))..........)))))..))))).))))))).)).))).).

Structure
- u   u  AG       U     UCa     --------ac   a 
 g ugc gc  CUGGUGU GUGAA   ggccg          ggc a
 | ||| ||  ||||||| |||||   |||||          |||  
 c acg UG  GACCACA CACUU   Ucggc          ucg g
a u   U  -G       U     -UA     cuaucauccu   c 


Annotation confidence High
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Genome context
chr11: 2104525-2104607 [-]

Database links

Mature gga-miR-138-5p

Accession MIMAT0001122
Description Gallus gallus gga-miR-138-5p mature miRNA
Sequence 9 - AGCUGGUGUUGUGAAUC - 25
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature gga-miR-138-2-3p

Accession MIMAT0031069
Description Gallus gallus gga-miR-138-2-3p mature miRNA
Sequence 58 - UAUUUCACUACACCAGGGUU - 77
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716


  2. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  3. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45