miRBase entry: gga-mir-34b

Stem-loop gga-mir-34b


Accession
MI0001260
Description
Gallus gallus gga-mir-34b precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
7 open access papers mention gga-mir-34b
(122 sentences)

Sequence

17008 reads, 299 reads per million, 5 experiments
gugcuugguuugCAGGCAGUGUAGUUAGCUGAUUGuacccagcgccccacAAUCACUAAAUUCACUGCCAUCaaaacaaggcac
(((((((..(((..(((((((...((((.(((((((............)))))))))))...)))))))..)))..))).))))

Structure
    -   gu   CA       UAG    C       accca 
gugc uug  uug  GGCAGUG   UUAG UGAUUGu     g
|||| |||  |||  |||||||   |||| |||||||      
cacg aac  aaC  CCGUCAC   AAUC ACUAAca     c
    g   aa   UA       UUA    -       ccccg 


Annotation confidence High
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Comments
This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context
chr24: 5539134-5539217 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-34b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-34b-5p

Accession MIMAT0001179
Description Gallus gallus gga-miR-34b-5p mature miRNA
Sequence 13 - CAGGCAGUGUAGUUAGCUGAUUG - 35
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature gga-miR-34b-3p

Accession MIMAT0026540
Description Gallus gallus gga-miR-34b-3p mature miRNA
Sequence 51 - AAUCACUAAAUUCACUGCCAUC - 72
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45