Stem-loop sequence gga-mir-23b

Accession

MI0001273 (change log)

Description

Gallus gallus miR-23b stem-loop

Gene family

MIPF0000027; mir-23

Literature search

13 open access papers mention gga-mir-23b
(78 sentences)

Stem-loop

   u  ug       u   --          -  a      gug   u 
5'  gu  uggcugu ugg  guuccuggca ug ugauuu   agu a
    ||  ||||||| |||  |||||||||| || ||||||   |||  
3'  ca  accgaua acc  uagggaccgu ac acuaaa   uua a
   c  gu       c   au          u  -      --a   g 

Deep sequencing

71490 reads, 640 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chrZ: 41649166-41649251 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-23b

• gga-mir-23b: chrZ: 41649166-41649251 [+]
• gga-mir-27b: chrZ: 41649402-41649498 [+]
• gga-mir-24: chrZ: 41649935-41650002 [+]

Database links

• EntrezGene:
• RNAcentral:URS000075CD9F_9031
• miRBase Tracker:MI0001273

Mature sequence gga-miR-23b-5p

• Accession: MIMAT0026546
• Sequence: 15 - ggguuccuggcaugaugauuu - 35
• Deep sequencing: 40 reads, 4 experiments
• Evidence: experimental; Illumina [3]
• Predicted targets:
  • TargetScanVert:gga-miR-23b-5p
  • miRDB:gga-miR-23b-5p

Mature sequence gga-miR-23b-3p

• Accession: MIMAT0001186
• Sequence: 52 - aucacauugccagggauuacc - 72
• Deep sequencing: 71447 reads, 5 experiments
• Evidence: experimental; cloned [2], Illumina [3]
• Database links:
  • RNAcentral:URS0000183BED_9031
• Predicted targets:
  • TargetScanVert:gga-miR-23b-3p
  • miRDB:gga-miR-23b-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
3. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).