Stem-loop sequence gga-mir-183

Accession

MI0001278 (change log)

Description

Gallus gallus miR-183 stem-loop

Gene family

MIPF0000066; mir-183

Literature search

8 open access papers mention gga-mir-183
(115 sentences)

Stem-loop

   -----------a   c        g      --ac     ga        --   aa 
5'             cuc uguucugu uauggc    uggua  auucacug  ugc  c
               ||| |||||||| ||||||    |||||  ||||||||  |||   
3'             gag acgagaca auaccg    accau  uaagugac  gcg  c
   agcgcccagaaa   -        a      ggau     --        ug   cc 

Deep sequencing

9119 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr1: 844362-844459 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-183

• gga-mir-183: chr1: 844362-844459 [-]
• gga-mir-96: chr1: 844251-844336 [-]
• gga-mir-182: chr1: 843232-843313 [-]

Database links

• EntrezGene:
• miRBase Tracker:MI0001278

Mature sequence gga-miR-183

• Accession: MIMAT0001191
• Sequence: 15 - uauggcacugguagaauucacug - 37
• Deep sequencing: 9113 reads, 5 experiments
• Evidence: by similarity; MI0000928
• Predicted targets:
  • TargetScanVert:gga-miR-183
  • miRDB:gga-miR-183

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).