Stem-loop sequence dps-mir-4

Accession

MI0001296 (change log)

Description

Drosophila pseudoobscura miR-4 stem-loop

Gene family

MIPF0000305; mir-4

Literature search

1 open access papers mention dps-mir-4
(1 sentences)

Stem-loop

    ug    u gu   uu    c   c   cuuag      u 
5' u  caau a  uuc  uggu guc agc     gugauu c
   |  |||| |  |||  |||| ||| |||     |||||| u
3' g  guug u  aag  acca cag ucg     uacuag c
    gu    c ug   uu    a   a   --aaa      u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (dpse_r2.26_FB2012_01): 3: 12677418-12677498 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dps-mir-4

• dps-mir-309: 3: 12677889-12677956 [-]
• dps-mir-3: 3: 12677755-12677827 [-]
• dps-mir-286: 3: 12677589-12677685 [-]
• dps-mir-4: 3: 12677418-12677498 [-]
• dps-mir-5: 3: 12677240-12677311 [-]
• dps-mir-6-1: 3: 12677098-12677177 [-]
• dps-mir-6-2: 3: 12676947-12677029 [-]
• dps-mir-6-3: 3: 12676804-12676883 [-]

Database links

• miRBase Tracker:MI0001296

Mature sequence dps-miR-4

• Accession: MIMAT0001204
• Sequence: 49 - auaaagcuagacaaccauuga - 69
• Evidence: by similarity; MI0000122, MI0000122