Stem-loop sequence dps-mir-79

Accession

MI0001318 (change log)

Description

Drosophila pseudoobscura miR-79 stem-loop

Gene family

MIPF0000014; mir-9

Literature search

1 open access papers mention dps-mir-79
(1 sentences)

Stem-loop

   cugcucu   uc        cgc       g     uag  u 
5'        gcu  ugcuuugg   uuuagcu uauga   au u
          |||  ||||||||   ||||||| |||||   || a
3'        cgg  acgaaacc   agaucga auacu   ua a
   ---gucu   uu        auu       a     uca  a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (dpse_r2.26_FB2012_01): 4_group3: 8443999-8444082 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dps-mir-79

• dps-mir-9c: 4_group3: 8443195-8443286 [+]
• dps-mir-306: 4_group3: 8443820-8443899 [+]
• dps-mir-79: 4_group3: 8443999-8444082 [+]
• dps-mir-9b: 4_group3: 8444194-8444284 [+]

Database links

• miRBase Tracker:MI0001318

Mature sequence dps-miR-79

• Accession: MIMAT0001224
• Sequence: 55 - uaaagcuagauuaccaaagcau - 76
• Evidence: by similarity; MI0000374, MI0000374