Stem-loop sequence dre-mir-7b

AccessionMI0001360
DescriptionDanio rerio miR-7b stem-loop
Gene family MIPF0000022; mir-7
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-7_microRNA_precursor. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

This family represents the microRNA (miRNA) precursor mir-7. This miRNA has been predicted or experimentally confirmed in a wide range of species. miRNAs are transcribed as ~70 nucleotide precursors (modelled here) and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. In this case the mature sequence comes from the 5' arm of the precursor. The extents of the hairpin precursors are not generally known and are estimated based on hairpin prediction. The involvement of Dicer in miRNA processing suggests a relationship with the phenomenon of RNA interference. Mature miRNA-7 is derived from three microRNA precursors in the human genome, miR-7-1, miR-7-2 and miR-7-3. miRNAs are numbered based on the sequence of the mature RNA. miR-7 is directly regulated by the transcription factor HoxD10. miRNAs are thought to have regulatory roles through complementarity to mRNA. miR-7 is essential for the maintenance of regulatory stability under conditions of environmental flux. It plays an important role in controlling mRNA expression. The miR-7 gene is found in most sequenced Urbilateria species, and the sequence of its mature miRNA product is perfectly conserved from annelids to humans, indicating a strong functional conservation.

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Stem-loop
   ugaac     -    cuu     u  a     u       u     ug  aguu 
5'      gcugg cuug   cugug gg agacu gugauuu guugu  uu    a
        ||||| ||||   ||||| || ||||| ||||||| |||||  ||     
3'      cgacc ggac   gacau cc ucugg cacuaaa caaca  ga    g
   --cua     c    -ac     c  g     -       -     gu  agua 
Get sequence
Deep sequencing
1849 reads, 241 reads per million, 4 experiments
Confidence
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Genome context
Coordinates (Zv9) Overlapping transcripts
5: 56985001-56985104 [-]
sense
OTTDART00000040008 ; hnrpkl-002; intron 12
OTTDART00000040007 ; hnrpkl-001; intron 15
ENSDART00000139236 ; hnrpkl-002; intron 12
ENSDART00000005671 ; hnrpkl-201; intron 14
ENSDART00000133156 ; hnrpkl-001; intron 15
Database links

Mature sequence dre-miR-7b

Accession MIMAT0001265
Sequence

23 - 

uggaagacuugugauuuuguu

 - 43

Get sequence
Deep sequencing1638 reads, 4 experiments
Evidence experimental; PCR [1]

References

1
PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).