Stem-loop dre-mir-182

Accession

MI0001368

Description

Danio rerio dre-mir-182 precursor miRNA mir-182

Gene
family

RF00702; mir-182

Literature search

10 open access papers mention dre-mir-182
(117 sentences)

Sequence

31887 reads, 2020 reads per million, 11 experiments

guaUUUGGCAAUGGUAGAACUCACAcuggugagguagucagauccggUGGUUCUAGACUUGCCAACUA
....(((((((...((((((...(((((((((.....)))...))))))))))))...)))))))...

Structure

guaU       UGG      UCA      ---   g 
    UUGGCAA   UAGAAC   CAcugg   uga g
    |||||||   ||||||   ||||||   ||| u
    AACCGUU   AUCUUG   GUggcc   acu a
-AUC       CAG      ---      uag   g 

Annotation confidence Not enough data

Genome context

chr4: 15075665-15075732 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-182

Mature dre-miR-182-5p

• Accession: MIMAT0001271
• Description: Danio rerio dre-miR-182-5p mature miRNA
• Sequence: 4 - UUUGGCAAUGGUAGAACUCACA - 25
• Evidence: experimental ; PCR [1], cloned [2]

Mature dre-miR-182-3p

• Accession: MIMAT0001272
• Description: Danio rerio dre-miR-182-3p mature miRNA
• Sequence: 48 - UGGUUCUAGACUUGCCAACUA - 68
• Evidence: experimental ; PCR [1]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293