Stem-loop sequence dre-mir-214

Accession

MI0001381 (change log)

Description

Danio rerio miR-214 stem-loop

Gene family

MIPF0000062; mir-214

Literature search

15 open access papers mention dre-mir-214
(198 sentences)

Stem-loop

   ugacuga a  -  ug               aca            aacuu 
5'        g gc gu  ucugucugccugucu   cuugcugugcag     c
          | || ||  |||||||||||||||   ||||||||||||      
3'        c cg cg  agacagacggacaga   ggacgacauguc     c
   ---uccg c  a  gu               cac            cacgu 

Deep sequencing

14522 reads, 1.05e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr20: 14877639-14877738 [+]
• Overlapping transcripts:

  antisense

  OTTDART00000004875 ; dnm3-001; intron 15

  ENSDART00000047039 ; dnm3-201; intron 14

  ENSDART00000152641 ; dnm3-001; intron 15

Clustered miRNAs

< 10kb from dre-mir-214

• dre-mir-199-1: chr20: 14875460-14875546 [+]
• dre-mir-214: chr20: 14877639-14877738 [+]

Database links

• EntrezGene:mir214
• EntrezGene:mir214
• RNAcentral:URS000075D6A0_7955
• miRBase Tracker:MI0001381

Mature sequence dre-miR-214

• Accession: MIMAT0001283
• Sequence: 62 - acagcaggcacagacaggcag - 82
• Deep sequencing: 13535 reads, 11 experiments
• Evidence: experimental; cloned [1-2]
• Database links:
  • RNAcentral:URS00002524E1_7955
• Predicted targets:
  • TargetScanFish:dre-miR-214

References

1. PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
2. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).