miRBase entry: dre-mir-214

Stem-loop dre-mir-214

Accession

MI0001381

Description

Danio rerio dre-mir-214 precursor miRNA mir-214

Gene
family?

RF00660; mir-214

Literature search

15 open access papers mention dre-mir-214
(206 sentences)

Sequence

2337 reads, 257 reads per million, 11 experiments

ugacugagagcguugucugucugccugucuacacuugcugugcagaacuuccugcaccuguACAGCAGGCACAGACAGGCAGacagauggcagcccgccu
.......(.(((((((((((((((((((((...((((((((((((............))))))))))))...))))))))))))))))))).)).)....

Structure

ugacuga a  -                   aca            aacuu 
       g gc guugucugucugccugucu   cuugcugugcag     c
       | || |||||||||||||||||||   ||||||||||||      
       c cg cgguagacaGACGGACAGA   GGACGACAuguc     c
---uccg c  a                   CAC            cacgu

Annotation confidence High

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Genome context

chr20: 14877639-14877738 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-214

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-214

Accession	MIMAT0001283
Description	Danio rerio dre-miR-214 mature miRNA
Sequence	62 - ACAGCAGGCACAGACAGGCAG - 82
Evidence	experimental cloned [1-2]
Database links
Predicted targets

References

PubMed ID: 12624257
Vertebrate microRNA genes
"Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
"Science (2003) 299:1540

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293