miRBase entry: cbr-mir-231

Stem-loop cbr-mir-231


Accession
MI0001394
Description
Caenorhabditis briggsae cbr-mir-231 precursor miRNA
Gene family
MIPF0000307; mir-231


Sequence

cuagcaccucaauguuguucugucuguuuccauagcuuauauuguaagguacuuaUAAGCUCGUGAACAACAGGCAGGAcaacuggaagugguguuuuuuuuca
..((((((.....(((((((((((((((..(((((((((((..(((...))).)))))))).)))...))))))))))))))).......))))))........

Structure
------cu      --ucaau               -uc   -        uu   a 
        agcacc       guuguucugucuguu   cau agcuuaua  gua  
        ||||||       |||||||||||||||   ||| ||||||||  ||| g
        uugugg       caacAGGACGGACAA   GUG UCGAAUau  cau  
acuuuuuu      ugaaggu               CAA   C        -u   g 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 positions.

Genome context
chrIII: 11907626-11907729 [+]

Database links

Mature cbr-miR-231

Accession MIMAT0001293
Description Caenorhabditis briggsae cbr-miR-231 mature miRNA
Sequence 56 - UAAGCUCGUGAACAACAGGCAGGA - 79
Evidence not_experimental

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008