Stem-loop cbr-mir-356

Accession

MI0001395

Description

Caenorhabditis briggsae cbr-mir-356 precursor miRNA

Gene family

MIPF0001209; mir-356

Literature search

1 open access papers mention cbr-mir-356
(1 sentences)

Sequence

ccucauccaaccaauguggAUGAGCAACGCGAACAAAUCCucuuauaagagauuugccacgccgccgcucaccacacuggcuuucagaaggugccaggaaucagaagacgag
.(((.((.......(((((.(((((...(((..((((((.(((....)))))))))...)))....))))))))))(((((...........))))).........)).)))

Structure

c   a  -----------------------caaccaa     A     -AAC   -AA      C   u 
 cuc uc                              ugugg UGAGC    GCG   CAAAUC ucu a
 ||| ||                              ||||| |||||    |||   |||||| |||  
 gag ag                              acacc acucg    cgc   guuuag aga u
-   c  aagacuaaggaccguggaagacuuucgguc     -     ccgc   acc      -   a 

Annotation confidence Not enough data

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at the two terminal positions.

Genome context

chrIII: 12439556-12439667 [-]

Mature cbr-miR-356

• Accession: MIMAT0001294
• Description: Caenorhabditis briggsae cbr-miR-356 mature miRNA
• Sequence: 20 - AUGAGCAACGCGAACAAAUCC - 40
• Evidence: not_experimental

References

1. PubMed ID: 15317971
   Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification
   "Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB"
   "RNA (2004) 10:1309-1322