Stem-loop sequence cbr-mir-246

Accession MI0001397
Description Caenorhabditis briggsae miR-246 stem-loop
Gene family MIPF0000260; mir-246
Stem-loop 
---gaaaagu  -    gauaa      a    g       u        -    aa 
          cc uagu     aacagc ccug ccaauau auguaaua ucag  g
          || ||||     |||||| |||| ||||||| |||||||| ||||  c
          gg aucg     uugucg ggau gguuaug uacauuau aguu  a
uggguaaauu  u    --aac      a    g       -        u    aa
Get sequence
Deep sequencing
11 reads, 1 experiments
Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 positions.

Genome context
Coordinates (WS200) Overlapping transcripts
chrIV: 5799914-5800022 [-]
intergenic

Mature sequence cbr-miR-246

Accession MIMAT0001296
Sequence

65 -  

uuacauguauuggguaggagcu

 - 86

Get sequence
Deep sequencing 9 reads, 1 experiments
Evidence by similarity; MI0000322

References

1
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).