miRBase entry: cbr-mir-239a

Stem-loop cbr-mir-239a

Accession

MI0001406

Description

Caenorhabditis briggsae cbr-mir-239a precursor miRNA

Gene family

MIPF0000135; mir-239

Sequence

gagaaugacgauccaaguuuaugcgauuUUUGUACUACAAUUAGGUACUGGacaccagcagcgaguguauccagaaucuauacuaguacaaaaauagcuaacaggauuaagau
.........(((((..(((...((.((((((((((((....(((((.(((((((((......).)))..))))).)))))...)))))))))))).)).))).))))).....

Structure

gagaaugac     aa   uau  g            CAAU     A     --   - ag 
         gaucc  guu   gc auuUUUGUACUA    UAGGU CUGGa  cac c  c
         |||||  |||   || ||||||||||||    ||||| |||||  ||| |   
         uuagg  caa   cg uaaaaacaugau    aucua gaccu  gug g  a
----uagaa     -a   --u  a            -cau     a     au   a cg

Annotation confidence Not enough data

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Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 positions.

Genome context

chrX: 15212563-15212675 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-239a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-239a

Accession	MIMAT0001304
Description	Caenorhabditis briggsae cbr-miR-239a mature miRNA
Sequence	29 - UUUGUACUACAAUUAGGUACUGG - 51
Evidence	not_experimental

References

PubMed ID: 12672692
The microRNAs of Caenorhabditis elegans
"Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
"Genes Dev (2003) 17:991-1008