Stem-loop sequence cbr-mir-35a

Accession MI0001415
Previous IDs cbr-mir-35
Description Caenorhabditis briggsae miR-35 stem-loop
Gene family MIPF0000302; mir-35
Stem-loop 
-----------ua u      ----cu       c          u  uu        uu   a 
             g ccaguu      ggacauu gcggguuuuu cc  cggugaua  cga g
             | ||||||      ||||||| |||||||||| ||  ||||||||  |||  
             c ggucag      ucuguga cguucaaaag gg  gccacuau  gcu a
uauguucguuuua u      cuucgu       a          u  --        -c   a
Get sequence
Deep sequencing
873 reads, 1 experiments
Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context
Coordinates (WS200) Overlapping transcripts
chrII: 7536620-7536731 [+]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-35a
cbr-mir-36 chrII: 7535770-7535863 [+]
cbr-mir-38 chrII: 7535868-7535963 [+]
cbr-mir-39 chrII: 7536042-7536139 [+]
cbr-mir-40 chrII: 7536143-7536240 [+]
cbr-mir-41b chrII: 7536263-7536362 [+]
cbr-mir-35d chrII: 7536385-7536474 [+]
cbr-mir-41a chrII: 7536494-7536603 [+]
cbr-mir-35a chrII: 7536620-7536731 [+]

Mature sequence cbr-miR-35a

Accession MIMAT0001313
Previous IDs cbr-miR-35
Sequence

59 -  

ucaccgggugaaaacuugcaag

 - 80

Get sequence
Deep sequencing 873 reads, 1 experiments
Evidence by similarity; MI0000006

References

1
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).