miRBase entry: cbr-mir-39

Stem-loop cbr-mir-39

Accession

MI0001419

Description

Caenorhabditis briggsae cbr-mir-39 precursor miRNA

Gene family

MIPF0000304; mir-39

Sequence

cagagaugcagggagcccaacugguucucacugcagugauaagcuauguuacagucuaUCACCGGGUGAAAAACGGUUAGgcucuuuaagcaucucug
(((((((((((((((((.(((((..(.(((((...((((((.(((.......))).))))))..))))).)..))))).))))))))..)))))))))

Structure

         --        c     gu c     gca      a   au 
cagagaugc  agggagcc aacug  u ucacu   gugaua gcu  g
|||||||||  |||||||| |||||  | |||||   |||||| |||  u
gucucuacg  uuucucgG UUGGC  A AGUGG   CACUau uga  u
         aa        A     AA A     -GC      c   ca

Annotation confidence Not enough data

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Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 5 positions at the 3' end.

Genome context

chrII: 8377829-8377926 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cbr-mir-39

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-39

Accession	MIMAT0001316
Description	Caenorhabditis briggsae cbr-miR-39 mature miRNA
Sequence	59 - UCACCGGGUGAAAAACGGUUAG - 80
Evidence	not_experimental

References

PubMed ID: 12672692
The microRNAs of Caenorhabditis elegans
"Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
"Genes Dev (2003) 17:991-1008