Stem-loop sequence cbr-mir-40

Accession MI0001420
Description Caenorhabditis briggsae miR-40 stem-loop
Gene family MIPF0000096; mir-36
Stem-loop 
   c     u     c   g    uu    g a      u  cgcauu 
ccc ugccc caccc agc gguu  cauc c gugaua ga      c
||| ||||| ||||| ||| ||||  |||| | |||||| ||      a
ggg gcggg guggg ucg cuaa  gugg g cacuau cu      a
   c     u     a   a    cu    - c      u  uuacca
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Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 3 positions.

Genome context
Coordinates (WS200) Overlapping transcripts
chrII: 7536143-7536240 [+]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-40
cbr-mir-36 chrII: 7535770-7535863 [+]
cbr-mir-38 chrII: 7535868-7535963 [+]
cbr-mir-39 chrII: 7536042-7536139 [+]
cbr-mir-40 chrII: 7536143-7536240 [+]
cbr-mir-41b chrII: 7536263-7536362 [+]
cbr-mir-35d chrII: 7536385-7536474 [+]
cbr-mir-41a chrII: 7536494-7536603 [+]
cbr-mir-35a chrII: 7536620-7536731 [+]

Mature sequence cbr-miR-40

Accession MIMAT0001317
Sequence

63 -  

ucaccgggugucaaucagcuag

 - 84

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Evidence by similarity; MI0000011

References

1
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).