miRBase entry: cbr-mir-40

Stem-loop cbr-mir-40

Accession

MI0001420

Description

Caenorhabditis briggsae cbr-mir-40 precursor miRNA

Gene family

MIPF0000096; mir-36

Sequence

ccccugcccucaccccagcggguuuucaucgcagugauaugacgcauucaaaccauuucuuaUCACCGGGUGUCAAUCAGCUAGggugugggcgcggg
(((.(((((.(((((.(((.((((..((((.(.((((((.((...............)).)))))).)))))..)))).))).))))).))))).)))

Structure

   c     u     c   g    uu    g a      u  cgcauu 
ccc ugccc caccc agc gguu  cauc c gugaua ga      c
||| ||||| ||||| ||| ||||  |||| | |||||| ||      a
ggg gcggg guggG UCG CUAA  GUGG G CACUau cu      a
   c     u     A   A    CU    - C      u  uuacca

Annotation confidence Not enough data

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Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 3 positions.

Genome context

chrII: 8377930-8378027 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cbr-mir-40

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-40

Accession	MIMAT0001317
Description	Caenorhabditis briggsae cbr-miR-40 mature miRNA
Sequence	63 - UCACCGGGUGUCAAUCAGCUAG - 84
Evidence	not_experimental

References

PubMed ID: 12672692
The microRNAs of Caenorhabditis elegans
"Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
"Genes Dev (2003) 17:991-1008