Stem-loop sequence cbr-mir-41a

Accession MI0001421
Previous IDs cbr-mir-41
Description Caenorhabditis briggsae miR-41 stem-loop
Gene family MIPF0000096; mir-36
Stem-loop 
-----      cag     aaau       ug          gua      caaca   aag 
     ugaaag   guccc    gccuugg  guuuuucgcc   gugaua     ucg   c
     ||||||   |||||    |||||||  ||||||||||   ||||||     |||    
     auuuuu   caggg    uggaacc  caaaaagugg   cacuau     agc   c
uguuu      --a     ---c       cu          -gc      -----   aua
Get sequence
Deep sequencing
29 reads, 1 experiments
Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 3 positions.

Genome context
Coordinates (WS200) Overlapping transcripts
chrII: 7536494-7536603 [+]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-41a
cbr-mir-36 chrII: 7535770-7535863 [+]
cbr-mir-38 chrII: 7535868-7535963 [+]
cbr-mir-39 chrII: 7536042-7536139 [+]
cbr-mir-40 chrII: 7536143-7536240 [+]
cbr-mir-41b chrII: 7536263-7536362 [+]
cbr-mir-35d chrII: 7536385-7536474 [+]
cbr-mir-41a chrII: 7536494-7536603 [+]
cbr-mir-35a chrII: 7536620-7536731 [+]

Mature sequence cbr-miR-41a

Accession MIMAT0001318
Previous IDs cbr-miR-41
Sequence

68 -  

ucaccgggugaaaaacuccca

 - 88

Get sequence
Deep sequencing 29 reads, 1 experiments
Evidence by similarity; MI0000012

References

1
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).