miRBase entry: osa-MIR413

Stem-loop osa-MIR413


Accession
MI0001433
Description
Oryza sativa osa-MIR413 precursor miRNA

Literature search
4 open access papers mention osa-MIR413
(5 sentences)

Sequence

acggCUAGUUUCACUUGUUCUGCACauguggaaaacaguuagcacucuaucugagucguaaucccaagcauuauuacagaaaaauaaaagugcauuacaaagaagucagacau
.......((((.((((.((((((....))))))....((((..((((.....))))..)))).....(((((.(((........))).))))).........)))).))))..

Structure
acggCUA    C    --------------------------------------------------------------------G      A 
       GUUU ACUU                                                                     UUCUGC C
       |||| ||||                                                                     ||||||  
       caga ugaa                                                                     aaggug a
-----ua    c    gaaacauuacgugaaaauaaaaagacauuauuacgaacccuaaugcugagucuaucucacgauugacaa      u 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
The status of this sequence as a miRNA has been questioned on the basis of lack of conservation in genomes other than Arabidopsis and rice, moderately poor precursor hairpin structure, lack of identified targets, and low Northern blot signal [2]. This sequence may therefore be removed in subsequent data releases.

Genome context
Chr12: 10136381-10136493 [+]

Database links

Mature osa-miR413

Accession MIMAT0001329
Description Oryza sativa osa-miR413 mature miRNA
Sequence 5 - CUAGUUUCACUUGUUCUGCAC - 25
Evidence not_experimental

References

  1. PubMed ID: 15345049
    Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
    Wang XJ, Reyes JL, Chua NH, Gaasterland T
    Genome Biol (2004) 5:R65

  2. PubMed ID: 16669754
    MicroRNAS and their regulatory roles in plants
    "Jones-Rhoades MW, Bartel DP, Bartel B"
    "Annu Rev Plant Biol (2006) 57:19-53