miRBase entry: osa-MIR416

Stem-loop osa-MIR416


Accession
MI0001436
Description
Oryza sativa osa-MIR416 precursor miRNA

Literature search
4 open access papers mention osa-MIR416
(6 sentences)

Sequence

gaugaggaguaugaauagaaagaauuagaaaagcuacggugguuguugagcagcgccaaaaaaaacucugcuuugcucuguuucugUGUUCGUCCGUACACUGUUCAuc
((((((.((((((((((...((((.(((((((((...((((.((((...))))))))............)))))..)))).)))).)))))))......))).))))))

Structure
      g   ------       gaa    u    --     ---------uac    g    u 
gaugag agu      augaaua   agaa uaga  aaagc            ggug uugu  
|||||| |||      |||||||   |||| ||||  |||||            |||| |||| g
cuACUU UCA      UGCUUGU   ucuu gucu  uuucg            ccgc gacg  
      G   CAUGCC       --g    u    cg     ucucaaaaaaaa    -    a 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
The status of this sequence as a miRNA has been questioned on the basis of lack of conservation in genomes other than Arabidopsis and rice, moderately poor precursor hairpin structure, lack of identified targets, and low Northern blot signal [2]. This sequence may therefore be removed in subsequent data releases.

Genome context
Chr4: 17456166-17456274 [+]

Database links

Mature osa-miR416

Accession MIMAT0001332
Description Oryza sativa osa-miR416 mature miRNA
Sequence 87 - UGUUCGUCCGUACACUGUUCA - 107
Evidence not_experimental

References

  1. PubMed ID: 15345049
    Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
    Wang XJ, Reyes JL, Chua NH, Gaasterland T
    Genome Biol (2004) 5:R65

  2. PubMed ID: 16669754
    MicroRNAS and their regulatory roles in plants
    "Jones-Rhoades MW, Bartel DP, Bartel B"
    "Annu Rev Plant Biol (2006) 57:19-53