miRBase entry: osa-MIR417

Stem-loop osa-MIR417


Accession
MI0001437
Description
Oryza sativa osa-MIR417 precursor miRNA

Literature search
4 open access papers mention osa-MIR417
(4 sentences)

Sequence

uuugguacaaauuugaauucuuaaaucucuuauauuaugauauGAAUGUAGUGAAUUUGUUCCAug
..(((.((((((((..((((....(((...........)))..)))).....)))))))).)))..

Structure
uu   u        ---ga    uuaa   ucuu 
  ugg acaaauuu     auuc    auc    a
  ||| ||||||||     ||||    |||    u
  ACC UGUUUAAG     UAAG    uag    a
gu   U        UGAUG    --ua   uauu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
The status of this sequence as a miRNA has been questioned on the basis of lack of conservation in genomes other than Arabidopsis and rice, moderately poor precursor hairpin structure, lack of identified targets, and low Northern blot signal [2]. This sequence may therefore be removed in subsequent data releases.

Genome context
Chr8: 14939853-14939918 [+]

Database links

Mature osa-miR417

Accession MIMAT0001333
Description Oryza sativa osa-miR417 mature miRNA
Sequence 44 - GAAUGUAGUGAAUUUGUUCCA - 64
Evidence not_experimental

References

  1. PubMed ID: 15345049
    Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
    Wang XJ, Reyes JL, Chua NH, Gaasterland T
    Genome Biol (2004) 5:R65

  2. PubMed ID: 16669754
    MicroRNAS and their regulatory roles in plants
    "Jones-Rhoades MW, Bartel DP, Bartel B"
    "Annu Rev Plant Biol (2006) 57:19-53