miRBase entry: zma-MIR156f

Stem-loop zma-MIR156f


Accession
MI0001457
Description
Zea mays zma-MIR156f precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
51 open access papers mention zma-MIR156f
(339 sentences)

Sequence

127017 reads, 135637 reads per million, 131 experiments
uggcugcuagaugguguggcUGACAGAAGAGAGUGAGCACgcaucggccagacugcaucuauauacggcugccccaaagcgacggaucgauggaugccuagccuaggccuaggcgcagcugcuguugcguGCUCACUUCUCUUUCUGUCAGCucucucucucauccu
.((.((..(((.((...((((((((((((((((((((((((((.((((.((.((((((((((...((..(((......))).)).....))))))(((((((....).)))))))))))))))).))))))))))).)))).))))))))))))).)))..)).)).

Structure
u  c  cu   u  ugu           -    -           u    c  a    -------------------      --aua  gc   cc 
 gg ug  aga gg   ggcUGACAGAA GAGA GUGAGCACgca cggc ag cugc                   aucuau     cg  ugc  c
 || ||  ||| ||   ||||||||||| |||| ||||||||||| |||| || ||||                   ||||||     ||  |||   
 cc ac  ucu uc   uCGACUGUCUU CUCU CACUCGugcgu gucg uc gacg                   uaggua     gc  gcg  a
u  u  uc   c  ---           U    U           u    -  -    cggauccggauccgauccg      gcuag  -a   aa 


Annotation confidence High
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Genome context
chr2: 185613978-185614144 [-]

Database links

Mature zma-miR156f-5p

Accession MIMAT0001352
Description Zea mays zma-miR156f-5p mature miRNA
Sequence 21 - UGACAGAAGAGAGUGAGCAC - 40
Evidence experimental
Illumina [2]

Mature zma-miR156f-3p

Accession MIMAT0015125
Description Zea mays zma-miR156f-3p mature miRNA
Sequence 131 - GCUCACUUCUCUUUCUGUCAGC - 152
Evidence experimental
Illumina [2]

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716