Stem-loop zma-MIR156b

Accession

MI0001459

Description

Zea mays zma-MIR156b precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

52 open access papers mention zma-MIR156b
(347 sentences)

Sequence

196828 reads, 201162 reads per million, 5 experiments

agaugaguuuuuugaagguuUGACAGAAGAGAGUGAGCACacacggugguuucuuaccaugagugucaugcuaggagcugugcguGCUCACCCUCUAUCUGUCAGUcacucaucaagcccaucu
(((((.((((..(((..(.((((((((((((.((((((((.((((((....(((((.(((((...))))).))))))))))).)))))))).)))).)))))))).)..)))..)))).)))))

Structure

     a    uu   ag u        -    A        a      gguu     c     g 
agaug guuu  uga  g uUGACAGA AGAG GUGAGCAC cacggu    ucuua cauga  
||||| ||||  |||  | |||||||| |||| |||||||| ||||||    ||||| ||||| u
ucuac cgaa  acu  c GACUGUCU UCUC CACUCGug gugucg    aggau guacu  
     c    cu   ca U        A    C        c      ----     c     g 

Annotation confidence Not enough data

Genome context

chr3: 6928278-6928401 [-]

Mature zma-miR156b-5p

• Accession: MIMAT0001354
• Description: Zea mays zma-miR156b-5p mature miRNA
• Sequence: 21 - UGACAGAAGAGAGUGAGCAC - 40
• Evidence: experimental ; Illumina [3]

Mature zma-miR156b-3p

• Accession: MIMAT0015127
• Description: Zea mays zma-miR156b-3p mature miRNA
• Sequence: 86 - GCUCACCCUCUAUCUGUCAGU - 106
• Evidence: experimental ; Illumina [3]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


3. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360