Stem-loop zma-MIR156e

Accession

MI0001461

Description

Zea mays zma-MIR156e precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

51 open access papers mention zma-MIR156e
(342 sentences)

Sequence

126369 reads, 132496 reads per million, 24 experiments

ccggcgggcgcgcgcgcggUGACAGAAGAGAGUGAGCACacggccggugugacggcaccggcgcggaugugccgucgcggccgcguGCUCACUGCUCUCUCUGUCAUCcgcuggcacacccucacg
.(((.(((.(.((..((((((((((((((((((((((((.(((((...((((((((((((...)))...)))))))))))))).))))))))).)))).))))))).))))..)).).))).).))

Structure

c  - c   c c  gc    -       -    -         a     ggu         ---   g 
 cg g ggg g gc  gcgg UGACAGA AGAG AGUGAGCAC cggcc   gugacggca   ccg  
 || | ||| | ||  |||| ||||||| |||| ||||||||| |||||   |||||||||   ||| c
 gc c ccc c cg  cgcC ACUGUCU UCUC UCACUCGug gccgg   cgcugccgu   ggc  
-  a u   a a  gu    U       C    G         c     ---         gua   g 

Annotation confidence High

Genome context

chr2: 33005026-33005151 [+]

Mature zma-miR156e-5p

• Accession: MIMAT0001356
• Description: Zea mays zma-miR156e-5p mature miRNA
• Sequence: 20 - UGACAGAAGAGAGUGAGCAC - 39
• Evidence: experimental ; Illumina [2]

Mature zma-miR156e-3p

• Accession: MIMAT0015128
• Description: Zea mays zma-miR156e-3p mature miRNA
• Sequence: 87 - GCUCACUGCUCUCUCUGUCAUC - 108
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716