miRBase entry: zma-MIR156a

Stem-loop zma-MIR156a


Accession
MI0001462
Description
Zea mays zma-MIR156a precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
54 open access papers mention zma-MIR156a
(374 sentences)

Sequence

126588 reads, 130538 reads per million, 9 experiments
uucguuccguggcuaacUGACAGAAGAGAGUGAGCACacagcgggcagacugcaucgaucgaucugcauccgagacggcgcacguacgaaugaugaugcagcugcugcugcguGCUCACUUCUCUCUCUGUCAGUccucuagcugcuacggc
.((((...(((((((((((((((((((((((((((((.((((((.(((.(((((((.((((.(((((..(((...))).))).....)).)))))))))))))))))))).)))))))).))))).)))))))))....))))))).)))).

Structure
u    ucc       ----         -     -        a      g   a       g    a  -----   au   a 
 ucgu   guggcua    acUGACAGA AGAGA GUGAGCAC cagcgg cag cugcauc aucg uc     ugc  ccg  
 ||||   |||||||    ||||||||| ||||| |||||||| |||||| ||| ||||||| |||| ||     |||  ||| g
 ggca   cgucgau    UGACUGUCU UCUCU CACUCGug gucguc guc gacguag uagu ag     acg  ggc  
c    --u       cucc         C     U        c      -   -       -    a  caugc   -c   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 87069146-87069297 [-]

Database links

Mature zma-miR156a-5p

Accession MIMAT0001357
Description Zea mays zma-miR156a-5p mature miRNA
Sequence 18 - UGACAGAAGAGAGUGAGCAC - 37
Evidence experimental
Illumina [2]
Database links

Mature zma-miR156a-3p

Accession MIMAT0015129
Description Zea mays zma-miR156a-3p mature miRNA
Sequence 114 - GCUCACUUCUCUCUCUGUCAGU - 135
Evidence experimental
Illumina [2]

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716