Stem-loop zma-MIR160a

Accession

MI0001465

Description

Zea mays zma-MIR160a precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

22 open access papers mention zma-MIR160a
(83 sentences)

Sequence

577 reads, 1707 reads per million, 5 experiments

uugugugcgUGCCUGGCUCCCUGUAUGCCAcacauguagcgcccaacccagaugyuaagguugccugcugugggugGCGUGCAAGGGGCCAAGCAUGcauccau
.((.((((((((.(((((((.((((((((((.(((..((((..(((((..........)))))..))))))).)))))))))).))))))).)))))))).)).

Structure

u  u        C       C          a   gu    cc     caga 
 ug gugcgUGC UGGCUCC UGUAUGCCAc cau  agcg  caacc    u
 || |||||||| ||||||| |||||||||| |||  ||||  |||||     
 ac uacGUACG ACCGGGG ACGUGCGgug gug  ucgu  guugg    g
u  c        A       A          g   --    cc     aauy 

Annotation confidence Not enough data

Genome context

chr4: 241638522-241638625 [+]

Mature zma-miR160a-5p

• Accession: MIMAT0001360
• Description: Zea mays zma-miR160a-5p mature miRNA
• Sequence: 10 - UGCCUGGCUCCCUGUAUGCCA - 30
• Evidence: experimental ; Illumina [2]

Mature zma-miR160a-3p

• Accession: MIMAT0015132
• Description: Zea mays zma-miR160a-3p mature miRNA
• Sequence: 77 - GCGUGCAAGGGGCCAAGCAUG - 97
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716