miRBase entry: zma-MIR160c

Stem-loop zma-MIR160c


Accession
MI0001466
Description
Zea mays zma-MIR160c precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
21 open access papers mention zma-MIR160c
(75 sentences)

Sequence

578 reads, 2127 reads per million, 5 experiments
aggaugUGCCUGGCUCCCUGUAUGCCAcucaucuagagcaacgacagcuugguaggguugccuauaagauggaugGCGUGCAUGGUGCCAAGCAUAucuc
.((((((((.((((.((.(((((((((.((((((((.(((((..............)))))))...)))))).))))))))).)).)))).)))))))).

Structure
a        C    U  C         c      ---  a     gacagc 
 ggaugUGC UGGC CC UGUAUGCCA ucaucu   ag gcaac      u
 |||||||| |||| || ||||||||| ||||||   || |||||       
 ucuAUACG ACCG GG ACGUGCGgu gguaga   uc cguug      u
c        A    U  U         a      aua  -     ggaugg 


Annotation confidence Not enough data
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Genome context
chr6: 9551862-9551961 [+]

Database links

Mature zma-miR160c-5p

Accession MIMAT0001361
Description Zea mays zma-miR160c-5p mature miRNA
Sequence 7 - UGCCUGGCUCCCUGUAUGCCA - 27
Evidence experimental
Illumina [2]

Mature zma-miR160c-3p

Accession MIMAT0015133
Description Zea mays zma-miR160c-3p mature miRNA
Sequence 76 - GCGUGCAUGGUGCCAAGCAUA - 96
Evidence experimental
Illumina [2]

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716