Stem-loop zma-MIR160d

Accession

MI0001467

Description

Zea mays zma-MIR160d precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

21 open access papers mention zma-MIR160d
(75 sentences)

Sequence

601 reads, 2388 reads per million, 7 experiments

ggccaggggcgggaucgauaUGCCUGGCUCCCUGUAUGCCAcucgcauggcugccaacucaucaugcauacacugcuagcuagucguuggcuccacugcggaugGCGUGCGUGGAGCCAAGCAUGaccgaucaucuccuccu
((..(((((...(((((.(((((.(((((((.(((((((((.((((((((..((((((.......(((.....))).........)))))).))).))))).))))))))).))))))).)))))..)))))..))))))).

Structure

-  cc     cgg     -a     C       C         c     -   cu      --ucaucau   u 
 gg  agggg   gaucg  uaUGC UGGCUCC UGUAUGCCA ucgca ugg  gccaac         gca a
 ||  |||||   |||||  ||||| ||||||| ||||||||| ||||| |||  ||||||         ||| c
 cc  uccuc   cuagc  GUACG ACCGAGG GCGUGCGgu ggcgu acc  cgguug         cgu a
u  --     -ua     ca     A       U         a     c   -u      cugaucgau   c 

Annotation confidence Not enough data

Genome context

chr1: 288700634-288700775 [-]

Mature zma-miR160d-5p

• Accession: MIMAT0001362
• Description: Zea mays zma-miR160d-5p mature miRNA
• Sequence: 21 - UGCCUGGCUCCCUGUAUGCCA - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR160d-3p

• Accession: MIMAT0015134
• Description: Zea mays zma-miR160d-3p mature miRNA
• Sequence: 105 - GCGUGCGUGGAGCCAAGCAUG - 125
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716