Stem-loop sequence zma-MIR164d

Accession

MI0001470 (change log)

Description

Zea mays miR164d stem-loop

Gene family

MIPF0000045; MIR164

Literature search

28 open access papers mention zma-MIR164d
(201 sentences)

Stem-loop

   u            -  acgc        c   g       a     auacgccauucucgaucucuccucuccaccacuacugcaucuagcuaucuccauggaugga 
5'  gagugagaagga cc    uggagaag agg cacgugc ugcac                                                             u
    |||||||||||| ||    |||||||| ||| ||||||| |||||                                                             g
3'  uucacucuuucu gg    accucuuc ucu gugcacg acgug                                                             u
   c            u  cacu        c   g       c     ucggucguacguacucgagcgaucgaauaacgaagaggcuagcuaggucaggcucgaugca 

Deep sequencing

4395 reads, 857 reads per million, 168 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr7: 178154786-178155001 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001470

Mature sequence zma-miR164d-5p

• Accession: MIMAT0001365
• Previous IDs: zma-miR164d
• Sequence: 20 - uggagaagcagggcacgugca - 40
• Deep sequencing: 3941 reads, 39 experiments
• Evidence: experimental; Illumina [2]

Mature sequence zma-miR164d-3p

• Accession: MIMAT0015137
• Previous IDs: zma-miR164d*
• Sequence: 178 - cacguggucuccuucuccau - 197
• Deep sequencing: 111 reads, 108 experiments
• Evidence: experimental; Illumina [2]

References

1. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).