Stem-loop zma-MIR164c

Accession

MI0001472

Description

Zea mays zma-MIR164c precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

29 open access papers mention zma-MIR164c
(206 sentences)

Sequence

2816 reads, 11750 reads per million, 168 experiments

uggcgaggugcgcgcggUGGAGAAGCAGGGCACGUGCAuucuuuccgucgccggccggcuuggcagcggccggcggcccggcucucgcagucacgcguacgucgccugagcggcgcgcgcgagagagagagacacggcaggucgucgccggcgcggcuaacuggugcaggugcagcagcuagcuucugaaacccagccagccagccagccggccggccggccgaucgaugcgugCAUGUGCCCUUCUUCUCCAUCgggcacgccucgccu
.(((((((((.((.(((((((((((.(((((((((((((.(..((.((((((((((((((.(((.(((.(((((((((((..((((.(..((.(((((.((((((....)))))).))))).))..).))))..)))......)))))))))))((((..(((((...(((.(((.((....)).)))..)))..)))))..)))).))))))))))))).)))).)).).))))))))))))).))))))))))).)).))))))))).

Structure

u         c  g           C             u uu  c    -          u   ----------------------------------------------------a   g        ------   gc    g ag  a     a      c 
 ggcgaggug gc cggUGGAGAAG AGGGCACGUGCAu c  uc gucg ccggccggcu ggc                                                     gcg ccggcggc      ccg  ucuc c  uc cgcgu cgucgc u
 ||||||||| || ||||||||||| ||||||||||||| |  || |||| |||||||||| |||                                                     ||| ||||||||      |||  |||| |  || ||||| ||||||  
 ccgcuccgc cg gCUACCUCUUC UCCCGUGUACgug g  ag uagc ggccggccgg ccg                                                     cgc ggccgcug      ggc  agag g  ag gcgcg gcggcg g
u         a  g           U             c -u  c    c          -   accgaccgaccgacccaaagucuucgaucgacgacguggacguggucaaucgg   -        cuggac   ac    a ag  a     c      a 

Annotation confidence Low

Genome context

chr6: 157477837-157478106 [+]

Mature zma-miR164c-5p

• Accession: MIMAT0001367
• Description: Zea mays zma-miR164c-5p mature miRNA
• Sequence: 18 - UGGAGAAGCAGGGCACGUGCA - 38
• Evidence: experimental ; Illumina [2]

Mature zma-miR164c-3p

• Accession: MIMAT0015139
• Description: Zea mays zma-miR164c-3p mature miRNA
• Sequence: 235 - CAUGUGCCCUUCUUCUCCAUC - 255
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716